Syst Biol: Most-Cited Full-Text Articles
http://sysbio.oxfordjournals.org/
Most-cited rankings are recalculated at the beginning of the month and are based on citations to articles on this journal site from articles in other HighWire-hosted journals.2009-11-20<![CDATA[A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood]]>
http://sysbio.oxfordjournals.org/cgi/content/short/52/5/696?rss=1&ssource=mfc
Oct 1, 2003; 52:696-704 Articles]]>Stephane Guindon, Olivier Gascuel2003-10-01Oxford University Press<![CDATA[Likelihood-Based Tests of Topologies in Phylogenetics]]>
http://sysbio.oxfordjournals.org/cgi/content/short/49/4/652?rss=1&ssource=mfc
Dec 1, 2000; 49:652-670 Articles]]>Nick Goldman, Jon P. Anderson, Allen G. Rodrigo2000-12-01Oxford University Press<![CDATA[Cases in which Parsimony or Compatibility Methods will be Positively Misleading]]>
http://sysbio.oxfordjournals.org/cgi/content/short/27/4/401?rss=1&ssource=mfc
Dec 1, 1978; 27:401-410 Articles]]>Joseph Felsenstein1978-12-01Oxford University Press<![CDATA[Distinguishing Homologous from Analogous Proteins]]>
http://sysbio.oxfordjournals.org/cgi/content/short/19/2/99?rss=1&ssource=mfc
Jun 1, 1970; 19:99-113 Articles]]>Walter M. Fitch1970-06-01Oxford University Press<![CDATA[Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/5/793?rss=1&ssource=mfc
Oct 1, 2004; 53:793-808 Articles]]>David Posada, Thomas R. Buckley2004-10-01Oxford University Press<![CDATA[Bayesian Phylogenetic Analysis of Combined Data]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/1/47?rss=1&ssource=mfc
Feb 1, 2004; 53:47-67 Articles]]>Johan A. A. Nylander, Fredrik Ronquist, John P. Huelsenbeck, Joseluis Nieves-Aldrey2004-02-01Oxford University Press<![CDATA[A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data]]>
http://sysbio.oxfordjournals.org/cgi/content/short/50/6/913?rss=1&ssource=mfc
Nov 1, 2001; 50:913-925 Articles]]>Paul O. Lewis2001-11-01Oxford University Press<![CDATA[Selecting the Best-Fit Model of Nucleotide Substitution]]>
http://sysbio.oxfordjournals.org/cgi/content/short/50/4/580?rss=1&ssource=mfc
Aug 1, 2001; 50:580-601 Articles]]>David Posada, Keith A. Crandall2001-08-01Oxford University Press<![CDATA[An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis]]>
http://sysbio.oxfordjournals.org/cgi/content/short/42/2/182?rss=1&ssource=mfc
Jun 1, 1993; 42:182-192 Research Papers]]>David M. Hillis, James J. Bull1993-06-01Oxford University Press<![CDATA[Procedures for the Analysis of Comparative Data Using Phylogenetically Independent Contrasts]]>
http://sysbio.oxfordjournals.org/cgi/content/short/41/1/18?rss=1&ssource=mfc
Mar 1, 1992; 41:18-32 Articles]]>Theodore Garland Jr., Paul H. Harvey, Anthony R. Ives1992-03-01Oxford University Press<![CDATA[Gene Trees in Species Trees]]>
http://sysbio.oxfordjournals.org/cgi/content/short/46/3/523?rss=1&ssource=mfc
Sep 1, 1997; 46:523-536 Articles]]>Wayne P. Maddison1997-09-01Oxford University Press<![CDATA[Divergence Time and Evolutionary Rate Estimation with Multilocus Data]]>
http://sysbio.oxfordjournals.org/cgi/content/short/51/5/689?rss=1&ssource=mfc
Sep 1, 2002; 51:689-702 Articles]]>Jeffrey L. Thorne, Hirohisa Kishino2002-09-01Oxford University Press<![CDATA[Gaps as Characters in Sequence-Based Phylogenetic Analyses]]>
http://sysbio.oxfordjournals.org/cgi/content/short/49/2/369?rss=1&ssource=mfc
Jun 1, 2000; 49:369-381 ]]>Mark P. Simmons, Helga Ochoterena2000-06-01Oxford University Press<![CDATA[A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/4/571?rss=1&ssource=mfc
Aug 1, 2004; 53:571-581 Articles]]>Mark Pagel, Andrew Meade2004-08-01Oxford University Press<![CDATA[Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods]]>
http://sysbio.oxfordjournals.org/cgi/content/short/50/4/525?rss=1&ssource=mfc
Aug 1, 2001; 50:525-539 Articles]]>David L. Swofford, Peter J. Waddell, John P. Huelsenbeck, Peter G. Foster, Paul O. Lewis, James S. Rogers2001-08-01Oxford University Press<![CDATA[Performance-Based Selection of Likelihood Models for Phylogeny Estimation]]>
http://sysbio.oxfordjournals.org/cgi/content/short/52/5/674?rss=1&ssource=mfc
Oct 1, 2003; 52:674-683 Articles]]>Vladimir Minin, Zaid Abdo, Paul Joyce, Jack Sullivan2003-10-01Oxford University Press<![CDATA[Biogeography and Floral Evolution of Baobabs Adansonia, Bombacaceae as Inferred From Multiple Data Sets]]>
http://sysbio.oxfordjournals.org/cgi/content/short/47/2/181?rss=1&ssource=mfc
Jun 1, 1998; 47:181-207 Articles]]>David A. Baum, Randall L. Small, Jonathan F. Wendel1998-06-01Oxford University Press<![CDATA[Triploblastic Relationships with Emphasis on the Acoelomates and the Position of Gnathostomulida, Cycliophora, Plathelminthes, and Chaetognatha: A Combined Approach of 18S rDNA Sequences and Morphology]]>
http://sysbio.oxfordjournals.org/cgi/content/short/49/3/539?rss=1&ssource=mfc
Sep 1, 2000; 49:539-562 Articles]]>Gonzalo Giribet, Daniel L. Distel, Martin Polz, Wolfgang Sterrer, Ward C. Wheeler2000-09-01Oxford University Press<![CDATA[The Maximum Likelihood Approach to Reconstructing Ancestral Character States of Discrete Characters on Phylogenies]]>
http://sysbio.oxfordjournals.org/cgi/content/short/48/3/612?rss=1&ssource=mfc
Jul 1, 1999; 48:612-622 Articles]]>Mark Pagel1999-07-01Oxford University Press<![CDATA[Missing Data, Incomplete Taxa, and Phylogenetic Accuracy]]>
http://sysbio.oxfordjournals.org/cgi/content/short/52/4/528?rss=1&ssource=mfc
Aug 1, 2003; 52:528-538 Articles]]>John J. Wiens2003-08-01Oxford University Press<![CDATA[Constructing a Significance Test for Incongruence]]>
http://sysbio.oxfordjournals.org/cgi/content/short/44/4/570?rss=1&ssource=mfc
Dec 1, 1995; 44:570-572 ]]>James S. Farris, Mari Kallersjo, Arnold G. Kluge, Carol Bult1995-12-01Oxford University Press<![CDATA[Inferring Complex Phylogenies Using Parsimony: An Empirical Approach Using Three Large DNA Data Sets for Angiosperms]]>
http://sysbio.oxfordjournals.org/cgi/content/short/47/1/32?rss=1&ssource=mfc
Mar 1, 1998; 47:32-42 Articles]]>Douglas E. Soltis, Pamela S. Soltis, Mark E. Mort, Mark W. Chase, Vincent Savolainen, Sara B. Hoot, Cynthia M. Morton1998-03-01Oxford University Press<![CDATA[Integrating Ambiguously Aligned Regions of DNA Sequences in Phylogenetic Analyses Without Violating Positional Homology]]>
http://sysbio.oxfordjournals.org/cgi/content/short/49/4/628?rss=1&ssource=mfc
Dec 1, 2000; 49:628-651 Articles]]>Francois Lutzoni, Peter Wagner, Valerie Reeb, Stefan Zoller2000-12-01Oxford University Press<![CDATA[Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics]]>
http://sysbio.oxfordjournals.org/cgi/content/short/52/5/665?rss=1&ssource=mfc
Oct 1, 2003; 52:665-673 Articles]]>Per Erixon, Bodil Svennblad, Tom Britton, Bengt Oxelman2003-10-01Oxford University Press<![CDATA[Comparing Bootstrap and Posterior Probability Values in the Four-Taxon Case]]>
http://sysbio.oxfordjournals.org/cgi/content/short/52/4/477?rss=1&ssource=mfc
Aug 1, 2003; 52:477-487 Articles]]>Michael P. Cummings, Scott A. Handley, Daniel S. Myers, David L. Reed, Antonis Rokas, Katarina Winka2003-08-01Oxford University Press<![CDATA[A Framework for the Quantitative Study of Evolutionary Trees]]>
http://sysbio.oxfordjournals.org/cgi/content/short/38/4/297?rss=1&ssource=mfc
Dec 1, 1989; 38:297-309 Articles]]>Michael D. Hendy, David Penny1989-12-01Oxford University Press<![CDATA[Phylogenetic Analysis of Covariance by Computer Simulation]]>
http://sysbio.oxfordjournals.org/cgi/content/short/42/3/265?rss=1&ssource=mfc
Sep 1, 1993; 42:265-292 Articles]]>Theodore Garland Jr., Allan W. Dickerman, Christine M. Janis, Jason A. Jones1993-09-01Oxford University Press<![CDATA[Amphioxus Mitochondrial DNA, Chordate Phylogeny, and the Limits of Inference Based on Comparisons of Sequences]]>
http://sysbio.oxfordjournals.org/cgi/content/short/47/1/61?rss=1&ssource=mfc
Mar 1, 1998; 47:61-76 Articles]]>Gavin J. P. Naylor, Wesley M. Brown1998-03-01Oxford University Press<![CDATA[Inferring Phylogeny Despite Incomplete Lineage Sorting]]>
http://sysbio.oxfordjournals.org/cgi/content/short/55/1/21?rss=1&ssource=mfc
Feb 1, 2006; 55:21-30 Articles]]>Wayne P. Maddison, L. Lacey Knowles2006-02-01Oxford University Press<![CDATA[Bacterial Species and Speciation]]>
http://sysbio.oxfordjournals.org/cgi/content/short/50/4/513?rss=1&ssource=mfc
Aug 1, 2001; 50:513-524 Articles]]>Frederick M. Cohan2001-08-01Oxford University Press<![CDATA[Frequentist Properties of Bayesian Posterior Probabilities of Phylogenetic Trees Under Simple and Complex Substitution Models]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/6/904?rss=1&ssource=mfc
Dec 1, 2004; 53:904-913 Articles]]>John P. Huelsenbeck, Bruce Rannala2004-12-01Oxford University Press<![CDATA[Partitioning and Combining Data in Phylogenetic Analysis]]>
http://sysbio.oxfordjournals.org/cgi/content/short/42/3/384?rss=1&ssource=mfc
Sep 1, 1993; 42:384-397 ]]>J. J. Bull, John P. Huelsenbeck, Clifford W. Cunningham, David L. Swofford, Peter J. Waddell1993-09-01Oxford University Press<![CDATA[Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical Biogeography]]>
http://sysbio.oxfordjournals.org/cgi/content/short/46/1/195?rss=1&ssource=mfc
Mar 1, 1997; 46:195-203 Articles]]>Fredrik Ronquist1997-03-01Oxford University Press<![CDATA[An Approximately Unbiased Test of Phylogenetic Tree Selection]]>
http://sysbio.oxfordjournals.org/cgi/content/short/51/3/492?rss=1&ssource=mfc
May 1, 2002; 51:492-508 Articles]]>Hidetoshi Shimodaira2002-05-01Oxford University Press<![CDATA[Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species]]>
http://sysbio.oxfordjournals.org/cgi/content/short/52/5/705?rss=1&ssource=mfc
Oct 1, 2003; 52:705-716 Articles]]>Ziheng Yang, Anne D. Yoder2003-10-01Oxford University Press<![CDATA[Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions]]>
http://sysbio.oxfordjournals.org/cgi/content/short/56/3/504?rss=1&ssource=mfc
Jun 1, 2007; 56:504-514 Articles]]>Liang Liu, Dennis K. Pearl2007-06-01Oxford University Press<![CDATA[Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards]]>
http://sysbio.oxfordjournals.org/cgi/content/short/54/3/373?rss=1&ssource=mfc
Jun 1, 2005; 54:373-390 Articles]]>Matthew C. Brandley, Andreas Schmitz, Tod W. Reeder2005-06-01Oxford University Press<![CDATA[Polytomies and Bayesian Phylogenetic Inference]]>
http://sysbio.oxfordjournals.org/cgi/content/short/54/2/241?rss=1&ssource=mfc
Apr 1, 2005; 54:241-253 Articles]]>Paul O. Lewis, Mark T. Holder, Kent E. Holsinger2005-04-01Oxford University Press<![CDATA[Modeling Compositional Heterogeneity]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/3/485?rss=1&ssource=mfc
Jun 1, 2004; 53:485-495 Articles]]>Peter G. Foster2004-06-01Oxford University Press<![CDATA[The Importance of Proper Model Assumption in Bayesian Phylogenetics]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/2/265?rss=1&ssource=mfc
Apr 1, 2004; 53:265-277 Articles]]>Alan R. Lemmon, Emily C. Moriarty2004-04-01Oxford University Press<![CDATA[Performance of Phylogenetic Methods in Simulation]]>
http://sysbio.oxfordjournals.org/cgi/content/short/44/1/17?rss=1&ssource=mfc
Mar 1, 1995; 44:17-48 Research Papers]]>John P. Huelsenbeck1995-03-01Oxford University Press<![CDATA[Evolutionary Rates Analysis of Leguminosae Implicates a Rapid Diversification of Lineages during the Tertiary]]>
http://sysbio.oxfordjournals.org/cgi/content/short/54/4/575?rss=1&ssource=mfc
Aug 1, 2005; 54:575-594 Articles]]>Matt Lavin, Patrick S. Herendeen, Martin F. Wojciechowski2005-08-01Oxford University Press<![CDATA[Bayesian Estimation of Ancestral Character States on Phylogenies]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/5/673?rss=1&ssource=mfc
Oct 1, 2004; 53:673-684 Articles]]>Mark Pagel, Andrew Meade, Daniel Barker2004-10-01Oxford University Press<![CDATA[Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence]]>
http://sysbio.oxfordjournals.org/cgi/content/short/56/1/17?rss=1&ssource=mfc
Feb 1, 2007; 56:17-24 Articles]]>Laura Salter Kubatko, James H. Degnan2007-02-01Oxford University Press<![CDATA[Potential Applications and Pitfalls of Bayesian Inference of Phylogeny]]>
http://sysbio.oxfordjournals.org/cgi/content/short/51/5/673?rss=1&ssource=mfc
Sep 1, 2002; 51:673-688 Articles]]>John P. Huelsenbeck, Bret Larget, Richard E. Miller, Fredrik Ronquist2002-09-01Oxford University Press<![CDATA[Increased Taxon Sampling Greatly Reduces Phylogenetic Error]]>
http://sysbio.oxfordjournals.org/cgi/content/short/51/4/588?rss=1&ssource=mfc
Jul 1, 2002; 51:588-598 Articles]]>Derrick J. Zwickl, David M. Hillis2002-07-01Oxford University Press<![CDATA[Success of Phylogenetic Methods in the Four-Taxon Case]]>
http://sysbio.oxfordjournals.org/cgi/content/short/42/3/247?rss=1&ssource=mfc
Sep 1, 1993; 42:247-264 Articles]]>John P. Huelsenbeck, David M. Hillis1993-09-01Oxford University Press<![CDATA[Phylogeny and Divergence-Date Estimates of Rapid Radiations in Muroid Rodents Based on Multiple Nuclear Genes]]>
http://sysbio.oxfordjournals.org/cgi/content/short/53/4/533?rss=1&ssource=mfc
Aug 1, 2004; 53:533-553 Articles]]>Scott J. Steppan, Ronald M. Adkins, Joel Anderson2004-08-01Oxford University Press<![CDATA[Phylogeny Reconstruction: The Role of Morphology]]>
http://sysbio.oxfordjournals.org/cgi/content/short/52/4/539?rss=1&ssource=mfc
Aug 1, 2003; 52:539-548 ]]>Robert W. Scotland, Richard G. Olmstead, Jonathan R. Bennett2003-08-01Oxford University Press<![CDATA[Multiple Regression and Correlation Extensions of the Mantel Test of Matrix Correspondence]]>
http://sysbio.oxfordjournals.org/cgi/content/short/35/4/627?rss=1&ssource=mfc
Dec 1, 1986; 35:627-632 ]]>Peter E. Smouse, Jeffrey C. Long, Robert R. Sokal1986-12-01Oxford University Press