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Systematic Biology Advance Access originally published online on July 16, 2009
Systematic Biology 2009 58(4):442-444; doi:10.1093/sysbio/syp038
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© Society of Systematic Biologists

Sampling Error Does Not Invalidate the Yule-Coalescent Model for Species Delimitation. A Response to Lohse (2009)

Anna Papadopoulou1,2, Michael T. Monaghan3, Timothy G. Barraclough2 and Alfried P. Vogler1,2,*

1 Department of Entomology, Natural History Museum, Cromwell Road, London SW7 5BD, UK
2 Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot SL5 7PY, UK
3 Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB), Mueggelseedamm 301, 12587 Berlin, Germany

* Correspondence to be sent to: Department of Entomology, Natural History Museum, Cromwell Road, London SW7 5BD, UK; E-mail: apv@nhm.ac.uk.

Received February 23, 2009; Revised March 30, 2009; Accepted June 9, 2009
The first 150 words of the full text of this article appear below.

Lohse (2009) used a simulation study to argue that the generalized mixed Yule-coalescent (GMYC) model (Pons et al. 2006; Fontaneto et al. 2007) may overestimate species numbers. He found that incomplete sampling of demes involved in the coalescence process could artificially produce clusters that are recognized as separate GMYC groups (species). The paper also criticizes our (Papadopoulou et al. 2008) simulations of the coalescent process where we found that GMYC groups are readily formed when migration among demes drops below a particular level (Nm < 0.01). We interpreted these results to indicate that divergent sequence clusters form under conditions of stringent population isolation and that these clusters resemble those widely seen in empirical data from mitochondrial DNA (mtDNA) sampled across multiple populations and species. Lohse's (2009) simulations confirmed our findings but warned that additional GMYC groups are recognizable when less than about 20% of . . . [Full Text of this Article]


    SAMPLING
 

    MORE COMPLEX MODELS
 

    CONCLUSIONS
 

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